Microfluidic Overhauser DNP chip for signal-enhanced compact NMR

Sebastian Z. Kiss, Niel MacKinnon and Jan G. Korvink

Scientific reports, 2021

Nuclear magnetic resonance at low field strength is an insensitive spectroscopic technique, precluding portable applications with small sample volumes, such as needed for biomarker detection in body fluids. Here we report a compact double resonant chip stack system that implements in situ dynamic nuclear polarisation of a 130 nL sample volume, achieving signal enhancements of up to − 60 w.r.t. the thermal equilibrium level at a microwave power level of 0.5 W. This work overcomes instrumental barriers to the use of NMR detection for point-of-care applications.

figure1

Computer aided design (CAD) views of the ODNP probe inside a palm-sized permanent magnet. The microfluidic chip features a sample reservoir and a MW resonator. A stacked figure-8 type RF transceive coil accepts the sample container and is sandwiched between a set of bi-planar electrical shim coils. A B0-field modulation coil is part of phase sensitive EPR detection. Figure used with permission.

Microfluidic platform for serial mixing experiments with in operando nuclear magnetic resonance spectroscopy

Marek Plata, William Hale, Manvendra Sharma, and Marcel Utz

Lab on a Chip, 2021

We present a microfluidic platform that allows in operando nuclear magnetic resonance (NMR) observation of serial mixing experiments. Gradually adding one reagent to another is a fundamental experimental modality, widely used to quantify equilibrium constants, for titrations, and in chemical kinetics studies. NMR provides a non-invasive means to quantify concentrations and to follow structural changes at the molecular level as a function of exchanged volume. Using active pneumatic valving on the microfluidic device directly inside an NMR spectrometer equipped with a transmission-line NMR microprobe, the system allows injection of aliquots and in situ mixing in a sample volume of less than 10 μL.

Graphical abstract: Microfluidic platform for serial mixing experiments with in operando nuclear magnetic resonance spectroscopy

Kinetic Investigation of a Cucurbit[7]uril-Based Pseudo[6]rotaxane System by Microfluidic NMR

Yibin Sun, Hongxun Fang, Xujing Lin, Xiuxiu Wang, Ganyu Chen, Xinchang Wang, Zhongqun Tian, Liulin Yang, Marcel Utz and Xiaoyu Cao

CCS Chemistry,2021

It is challenging to investigate fast supramolecular processes due to the lack of appropriate characterization methods with high structural resolution. In this study, microfluidic NMR spectroscopy as employed to monitor the kinetics of threading and dethreading of a pseudo[6]rotaxane system. By employing the high-time resolution of microfluidic NMR, 1H and 2D-ROESY NMR spectra were recorded at any time point 1.5 s after the onset of the process. By employing this technique, kinetic intermediates and rate-determining steps were successfully identified, which is not possible by other spectroscopic techniques. Our study demonstrates the capability of microfluidic NMR in investigating the mechanism of complex supramolecular systems.

Time-resolved non-invasive metabolomic monitoring of a single cancer spheroid by microfluidic NMR

Bishnubrata Patra, Manvendra Sharma, William Hale and Marcel Utz

Scientific Reports, 2021

We present a quantitative study of the metabolic activity of a single spheroid culture of human cancer cells. NMR (nuclear magnetic resonance) spectroscopy is an ideal tool for observation of live systems due to its non-invasive nature. However, limited sensitivity has so far hindered its application in microfluidic culture systems. We have used an optimised micro-NMR platform to observe metabolic changes from a single spheroid. NMR spectra were obtained by directly inserting microfluidic devices containing spheroids ranging from 150 μm to 300 μm in diameter in 2.5 μL of culture medium into a dedicated NMR probe. Metabolite concentrations were found to change linearly with time, with rates approximately proportional to the number of cells in the spheroid. The results demonstrate that quantitative monitoring of a single spheroid with 2500 cells is possible. A change in spheroid size by 600 cells leads to a clearly detectable change in the l-Lactic acid production rate (p=3.5×103). The consumption of d-Glucose and production of l-Lactic acid were approximately 2.5 times slower in spheroids compared to monolayer culture of the same number of cells. Moreover, while cells in monolayer culture were found to produce l-Alanine and l-Glutamine, spheroids showed slight consumption in both cases.

Integrated Impedance Sensors in a Microfluidic System: Toward a Fully Automated High Throughput NMR Spectroscopy

Poster Abstract

Omar Nassar, Mazin Jouda, Jan Korvink, Dario Mager and Neil MacKinnon

Karlsruhe Institute of Technology

MicroTAS 2020

ABSTRACT

Integrating microfluidic technologies with micro-NMR for high throughput spectroscopy with high sensitivity

In-Situ NMR Lab-on-a-Chip system for studying protein ligand interactions

Poster Abstract

Marek Plata, Manvendra Sharma, William Hale, Jörn Werner and Marcel Utz

University of Southampton

MicroTAS 2020

ABSTRACT

In the field of protein analytics NMR possesses nearly unparalleled capabilities. However, low sensitivity and resulting need for significant amounts of protein poses continuing challenge in its application. With introduction of miniaturised high-sensitivity detectors it has become possible to scale down sample use [1] to only few micrograms. Additionally, this has opened the doors for coupling of detection with microfluidic sample delivery into complex Lab-on-a-Chip systems. Here, we present a novel design for sequential volume exchange experiments, with an in operando detection by NMR, suited for qualitative and quantitative analysis of protein-ligand interactions.

KEYWORDS: Microfluidics, Micromixers, NMR, Protein

INTRODUCTION

NMR is uniquely placed at providing information of protein 3D structure, dynamics and interactions with a wide range of substrates with atomic resolution. Quantification of binding constants is typically based on repeated exchange of small quantities of fluid between two samples: one at zero ligand concentration, the other containing ligand concentration sufficient to ensure protein saturation. Binding is then monitored by exchanging fractions of the two solutions and recording NMR spectra of both samples. Chemical shift, linewidth or intensity changes of the nuclei involved in the interaction provide a read-out for the fraction bound. This process can ideally be implemente on a Lab-on-a-Chip device, eliminating the need for extensive, costly, and error-prone manipulations of the samples.

EXPERIMENTAL

All microfluidic devices are produced from PMMA layers, bonded under heat and pressure. After initial sample loading, all experimental steps are carried out in situ inside the NMR spectrometer. Sample solutions (A & B, see Fig. 1) are contained within the microfluidic chip and the connecting reservoir capillary. Overall 40 ml of sample,
equally divided into two solutions, is used. At the initial stage, only solution A is present inside the active sample circuit (Vs). A stepper-motor micropump (LabSmith) controls the injection volume (Vi) of sample B into the Vs. Mixing of the two volumes is achieved using a pneumatic microvalve [2] system to create a peristaltic flow [3] inside
the Vs. NMR data are obtained from a 2.5 ml volume of the detection chamber by the double resonance Transmission Line Probe (TLP) [4], allowing for acquisition of proton-detected heteronuclear correlation spectra of proteins.

RESULTS AND DISCUSSION

Fig. 2 demonstrates the successful volume exchange of fumaric acid and DSS solutions inside the microfluidic device, as monitored by the intensity changes of the corresponding signals (Fig. 3). The concentrations were determined by calibration against a signal from sodium acetate, present in both solutions. The probe capacity for protein NMR is exemplified by the heteronuclear 15N and 13C spectra obtained for ubiquitin and the SH3 domain of human protein FYN (fynSH3) (Fig. 4). Experiments were carried out at 14.1T on 1 mM (ubiquitin) and 2 mM (fynSH3) samples with overall acquisition time of 400 min in each spectrum.

CONCLUSION

In this work we present a novel microfluidic platform for NMR detected protein-ligand studies. This system operates inside the NMR spectrometer, and allows for detailed control over sample injection and mixing, operating with a mixing volume of approx. 10 ml, and essentially zero dead volume.

ACKNOWLEDGMENTS

This project is jointly funded by the EU Horizon 2020 TISuMR project, and Institute for Life Sciences, University of Southampton, UK

CONTACT
Corresponding author: marcel.utz@gux.net

In-Situ NMR lab-on-a-chip system for studying protein-ligand interactions

ArduiTaM: accurate and inexpensive NMR auto tune and match system

Mazin Jouda, Sarai M. Torres Delgado, Mehrdad Alinaghian Jouzadani, Dario Mager and Jan G. Korvink

Magnetic Resonance, 2020

We introduce a low-complexity, low-cost, yet sufficiently accurate automatic tune and match system for NMR and MRI applications. The ArduiTaM builds upon an Arduino Uno embedded system that drives a commercial frequency synthesiser chip to perform a frequency sweep around the Larmor frequency. The generated low-power signal is fed to the NMR coil, after which the reflected waves are detected using a directional coupler and amplified. The signal shape is then extracted by means of an envelope detector and passed on to the Arduino, which performs a dip search while continuously generating actuator control patterns to adjust the tune and match capacitors. The process stops once the signal dip reaches the Larmor frequency. The ArduiTaM works readily with any spectrometer frequency in the range from 1 to 23 T. The speed of the ArduiTaM is mainly limited by the clock of the Arduino and the capacitor actuation mechanism. The Arduino can easily be replaced by a higher-speed microcontroller, and varactors can replace stepper-motor controlled variable capacitors. The ArduiTaM is made available in open source, and so is easily duplicated.

Fiber bundle topology optimization of hierarchical microtextures for wetting behavior in Cassie-Baxter mode

Yongbo Deng, Weihong Zhang, Zhenyu Liu, Jihong Zhu and Jan G. Korvink

Structural and Multidisciplinary Optimisation, 2020

This paper presents the topology optimization of hierarchical microtextures for wetting behavior in the Cassie-Baxter mode, considering a structural unit of the hierarchical microtexture composed of base and secondary structures. The geometrical configuration of the considered structural unit can be described as a fiber bundle composed of an external surface of the base structure and the pattern of the secondary structures. Thus, two design variables are defined, one for the external surface of the base structure, and the other for the pattern of the secondary structures. The Young-Laplace equation, including a term depending on the mean curvature of the external surface, is used to describe the liquid/vapor interface imposed with a surface tension in the Cassie-Baxter mode. To overcome the difficulty of numerically computing the second-order derivative of the external surface, two partial differential equation filters are sequentially applied to the design variable of the base structure to ensure the numerical accuracy and feasibility of using an efficient linear-element-based finite element method to solve the Young-Laplace equation. To improve the performance of the hierarchical microtextures, the volume of the liquid bulges suspended at the liquid/vapor interface in the Cassie-Baxter mode, before the transition into the Wenzel mode, is minimized to optimize the match between the external surface of the base structure and the pattern of the secondary structures. In the topology optimization process, penalization of the material density of the surface tension is achieved by an artificial Marangoni phenomenon. In numerical examples, solid surfaces are tiled into textures with axial symmetry, radial symmetry, chirality, and quasiperiodicity; and structural units are derived consisting of base structures with peak shapes and dense secondary structures surrounding the crests of the peaks. The optimized performance of the derived structural units has been confirmed by comparisons.

Topology optimization on two-dimensional manifolds

Yongbo Deng, Zhenyu Liu, Jan G. Korvink

Computer Methods in Applied Mechanics and Engineering, 2020

This paper presents topology optimization on general two-dimensional manifolds for phenomena described by second-order partial differential equations, where the material interpolation is implemented by using the material distribution method. When a physical field is defined on a two-dimensional manifold, the material interpolation is implemented on a material parameter in the partial differential equation used to describe the distribution of the physical field. When the physical field is defined on a three-dimensional domain with its boundary conditions defined on a two-dimensional manifold corresponding a surface or an interface of this three-dimensional domain, the material density is used to formulate a mixed boundary condition of the partial differential equation for the physical field and implement the penalization between two different boundary types. Based on the homeomorphic property of two-dimensional manifolds, typical two-dimensional manifolds, e.g., sphere, torus, Möbius strip and Klein bottle, are included in the numerical tests, which are used to demonstrate this topology optimization approach for the design problems of fluidic mechanics, heat transfer and electromagnetics.

Glassy carbon microelectrodes minimize induced voltages, mechanical vibrations, and artifacts in magnetic resonance imaging

Surabhi Nimalkar, Erwin Fuhrer, Pedro Silva, Tri Nguyen, Martin Sereno, Sam Kassegne and Jan Korvink

Microsystems and Nanoengineering, 2019

The recent introduction of glassy carbon (GC) microstructures supported on flexible polymeric substrates has motivated the adoption of GC in a variety of implantable and wearable devices. Neural probes such as electrocorticography and penetrating shanks with GC microelectrode arrays used for neural signal recording and electrical stimulation are among the first beneficiaries of this technology. With the expected proliferation of these neural probes and potential clinical adoption, the magnetic resonance imaging (MRI) compatibility of GC microstructures needs to be established to help validate this potential in clinical settings. Here, we present GC microelectrodes and microstructures—fabricated through the carbon micro-electro-mechanical systems process and supported on flexible polymeric substrates—and carry out experimental measurements of induced vibrations, eddy currents, and artifacts. Through induced vibration, induced voltage, and MRI experiments and finite element modeling, we compared the performances of these GC microelectrodes against those of conventional thin-film platinum (Pt) microelectrodes and established that GC microelectrodes demonstrate superior magnetic resonance compatibility over standard metal thin-film microelectrodes. Specifically, we demonstrated that GC microelectrodes experienced no considerable vibration deflection amplitudes and minimal induced currents, while Pt microelectrodes had significantly larger currents. We also showed that because of their low magnetic susceptibility and lower conductivity, the GC microelectrodes caused almost no susceptibility shift artifacts and no eddy-current-induced artifacts compared to Pt microelectrodes. Taken together, the experimental, theoretical, and finite element modeling establish that GC microelectrodes exhibit significant MRI compatibility, hence demonstrating clear clinical advantages over current conventional thin-film materials, further opening avenues for wider adoption of GC microelectrodes in chronic clinical applications.